PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.9C9UT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 459aa    MW: 48469.8 Da    PI: 8.5453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.9C9UTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-056486123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aradu.9C9UT 64 FVCEICNKGFQRDQNLQLHRRGH 86
                 89*******************88 PP

2zf-C2H215.16.5e-05141162223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC+ C+k +  +s+ k H++t+
  Aradu.9C9UT 141 KCERCSKKYAVQSDWKAHMKTC 162
                  8*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-76386No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176486IPR015880Zinc finger, C2H2-like
PfamPF121717.2E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355210105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.33E-7135161No hitNo description
SMARTSM0035582140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MTTEPPPMPL SGEEAATLSA LDLETAPQPP APPLKKKRNL PGMPDPDAEV IALSPKTLLA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRATKEV RKRVYVCPEP SCVHHNPSRA  120
LGDLTGIKKH FCRKHGEKKL KCERCSKKYA VQSDWKAHMK TCGTREYRCG CGTLFSRRDS  180
FVTHRAFCDA LAEESAKAQT LSTDDKDGVG AGVTAASSSS PPQPPLTPST SVVSPTLSIQ  240
SSEIPENATR LSPPTTCVAK AVTTSTVLAT VLASSAGAAA PSTTSFPNVT AATSLSLSVP  300
LYLSNNVNDP RHHYTACPQP STTAALSATA LLQKAAQMGA ASSNTSLLRG LGLATSSTGY  360
HPQDESGIDN PIMQWNMSSH VKQENPSLAD HNLGLGLPCG DPGFADVMMG SPPMTRDLLG  420
LGIGGNGGDN VSRGGLSALL TSFGGNFDSS GDAGGVRHQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015933910.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ71e-127IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLK7KSV31e-179K7KSV3_SOYBN; Uncharacterized protein
STRINGGLYMA06G03630.21e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-112C2H2-like zinc finger protein